Список публикаций работ, выполненных с использованием оборудования ЦКП


2018 год


1. P.V. Chuvakhov, A.V. Fedorov, A.O. Obraz
Numerical simulation of turbulent spots generated by unstable wave packets in a hypersonic boundary layer
Computers & Fluids 162 (2018) 26–38


2. E.E. Tareyeva, Yu.D. Fomin, E.N. Tsiok, V.N. Ryzhov
Supercritical Anomalies and the Widom Line for the Isostructural Phase Transition in Solids
Theoretical and Mathematical Physics January 2018, Volume 194, Issue 1, pp 148–156


3. Andrey A. Shiryaev, Alexander L Trigub, Igor I Vlasov
Ion implantation in nanodiamonds: size effect and energy dependence
Scientific reports, 2018, Volume 8, Issue 1, Article number 5099


4. V.G. Bornyakov, V.V. Braguta, E.M. Ilgenfritz, A.Yu. Kotov, I.E. Kudrov, A.V. Molochkov, A.A. Nikolaev, R.N. Rogalyov
Confinement-deconfinement transition in dense SU(2) QCD
EPJ Web Conf. 175 (2018) 07009


5. D.L. Boyda, V.V. Braguta, M.I. Katsnelson, A.Yu. Kotov
Phase diagram and Chiral Magnetic Effect in Dirac Semimetals from Lattice Simulation
EPJ Web Conf. 175 (2018) 03001


6. N.Yu. Astrakhantsev, V.V. Braguta, M.I. Katsnelson, A.A. Nikolaev, M.V. Ulybyshev
Quantum Monte Carlo study of electrostatic potential in graphene
Phys.Rev. B97 (2018) no.3 035102


7. A. Gorobets
HPC2—A fully-portable, algebra-based framework for heterogeneous computing. Application to CFD
Computers and Fluids 0 0 0 (2018) 1–8


8. Nikita P. Kryuchkov, Stanislav O. Yurchenko, Yury D. Fomin, Elena N. Tsiok, Valentin N. Ryzhov
Complex crystalline structures in a two-dimensional core-softened system
Soft Matter, 14, 2152


9. Yu.D. Fomin, V.N. Ryzhov, E.N. Tsiok, V.V. Brazhkin
Dynamics, thermodynamics and structure of liquids and supercritical fluids: crossover at the Frenkel line
J. Phys.: Condens. Matter,  30 (13), 134003


10. Yu.D. Fomin, V.N. Ryzhov, E.N. Tsiok, E.A. Gaiduk
Phase diagram and melting scenarios of two-dimensional Hertzian spheres
Molecular Physics


11. R.A. Voronkov, N. Medvedev, R.A. Rymzhanov, A.E. Volkov
Ab-initio modeling of Al2O3 lattice instability under extreme excitation of the electronic system
Nuclear Inst. and Methods in Physics Research B


12. A. Gorobets
Parallel Algorithm of the NOISEtte Code for CFD and CAA Simulations
Lobachevskii Journal of Mathematics


13.V.G. Bornyakov, V.V. Braguta, E.M. Ilgenfritz, A.Yu. Kotov, A.V. Molochkov, A.A. Nikolaev
Observation of deconfinement in a cold dense quark medium
JHEP 1803 (2018) 161


14. Vadim V. Brazhkin, Clemens Prescher, Yury D. Fomin, Elena N Tsiok, Alexander G. Lyapin, Valentin N. Ryzhov, Vitali B. Prakapenka, Johannes Stefanski, Kostya Trachenko, Andrei V. Sapelkin
Comment on "Behavior of Supercritical Fluids Across the Frenkel Line"
J. Phys. Chem. B


15. A.V. Ilatovskiy, M.G. Petukhov
HIV-1 Tat phosphorylation on Ser-16 residue modulates HIV-1 transcription
Retrovirology. - 2018. - Vol. 15. - P. 39


16. A.A. Aksenov, A.V. Zhluktov, D.P. Silaev, S.A. Kharchenko, V.A. Ilyin, A.V. Pechenyuk, E.A. Ryabinkin, V.E. Velikhov
Investigating the Problems of Ship Propulsion on a Supercomputer
IEEE Computer Society, Proceedings of 2017 Ivannikov ISPRAS Open Conference (ISPRAS)


17. Yu.B. Ivanov, A.A. Soldatov
Vortex rings in fragmentation regions in heavy-ion collisions at vsNN=39 GeV
Phys. Rev. C 97, 044915


18. Yu.B. Ivanov, A.A. Soldatov
Bulk Properties of the Matter Produced at Energies of the Beam Energy Scan Program
Phys.Rev. C97 (2018) no.2, 024908


19. Yu. B. Ivanov, A.A. Soldatov
High baryon and energy densities achievable in heavy-ion collisions at  sNN----= 39 GeV
Phys.Rev. C97 (2018) no.2, 021901


20. M. Malovichko, N. Khokhlov, N. Yavich, M. Zhdanovbc
Acoustic 3D modeling by the method of integral equations
Computers & Geosciences Volume 111, February 2018, Pages 223-234


21. I.V. Volgin, S.V. Larin, A.V. Lyulin, S.V. Lyulin
Coarse-grained molecular-dynamics simulations of nanoparticle diffusion in polymer nanocomposites

Polymer 2018, 145, 80–87


22. T.M. Birshtein, A.A. Polotsky, A.D. Glova, V.M. Amoskov, A.A. Mercurieva, V.M. Nazarychev, S.V. Lyulin
How to fold back grafted chains in dipolar brushes
Polymer 2018, 147, 213–224


23. V.M. Nazarychev, V.P. Toshchevikov, S.V. Larin, S.V. Lyulin
Local orientational mobility of polyimide-based nanocomposites
Polymer 2018, 147, 142–149


24. A.D. Glova, S.G. Falkovich, D.I. Dmitrienko, A.V. Lyulin, S.V. Larin, V.M. Nazarychev, M. Karttunen, S.V. Lyulin
Scale-Dependent Miscibility of Polylactide and Polyhydroxybutyrate: Molecular Dynamics Simulations
Macromolecules 2018, 51, 552–563


25. T. Davris, A.V. Lyulin, A.R.C. Baljon, V.M. Nazarychev, I.V. Volgin, S.V. Larin, S.V. Lyulin
Linear Viscoelasticity of Polymers and Polymer Nanocomposites: Molecular-Dynamics Large Amplitude Oscillatory Shear and Probe Rheology Simulations
The Scaling of Relaxation Processes, Springer International Publishing AG, 2018


26. Yu.V. Lomachuk, Yu.A. Demidov, L.V. Skripnikov, A.V. Zaitsevskii, S.G. Semenov, N.S. Mosyagin, A.V. Titov
Calculation of Chemical Shifts of X-Ray-Emission Spectra of Niobium in Niobium(V) Oxides Relative to Metal
Optics and Spectroscopy (English translation of Optika i Spektroskopiya)  2018, Vol. 124, No. 4


27. Irina V. Lebedeva, Alexander S. Minkin, Andrey M. Popov, Andrey A. Knizhnik
Elastic constants of graphene: comparison of empirical potentials
Computational Material Science


28. Andrey A. Knizhnik, Alexander S. Minkin
Empirical potential for large scale modeling of AlGaN epitaxial growth
Nature Communications


29. Alexander S. Minkin, Andrey A. Knizhnik
Comparison of empirical potentials for III-nitrides modeling
Science Communications


30. Alexander S. Minkin, Andrey A. Knizhnik
Interatomic potential fitting: methods and applications
Computer Physics Communications


31. Alexander S. Minkin, Andrey A. Knizhnik
Simple python-based algorithm for interatomic potential fitting
Science Communications, Software Engineering and Advances in Computational Physics


32. L.L. Lev, I.O. Maiboroda, E.S. Grichuk, I.V. Belov, A.S. Minkin, N.K. Chumakov, I.S. Ezubchenko, M.L. Zaveskin, V.G. Valeyev, V.N. Strocov
ARPES imaging of electronic structure and metal-insulator transition in heavily Si-doped GaN
Nature Communications


33. Dmitry Bankov, Evgeny Khorov, Andrey Lyakhov, Ekaterina Stepanova

What is the Fastest Way to Connect Stations to a Wi-Fi HaLow Network?

MDPI Sensors


34. S. Smirnov, O. Sukhoroslov, O. Voloshinov
Using Resources of Supercomputing Centers with Everest Platform RusCDays
Communications in Computer and Information Science


35. A.B. Kukushkin, V.S. Neverov, P.A. Sdvizhenskii, V.V. Voloshinov

Automodel Solution for Superdiffusive Radiative Transfer in Stark-Broadened Spectral lines

Special Issue of the Swiss journal “Atoms”, titled “Stark broadening of spectral lines in plasmas”


36. A.B. Kukushkin, A.A. Kulichenko
Automodel solutions for superdiffusive transport by Levy walks
J. Phys. A: Math. Theor.


37. К.С. Гришаков,Н.Н. Дегтяренко, E.A. Mazur

Electron, phonon and superconducting properties of hydrides of yttrium and sulfur at high pressure

Journal of Physics Conferenceseries


38. A.S. Bikeev, D.A. Shkarovsky
Study of neutron-physical characteristics of VVER-1200 considering feedbacks using MCU Monte Carlo code


39. A.B. Sivak, P.A. Sivak, S.V. Korovin, V.M. Chernov
Accelerated kinetic Monte Carlo method for calculation of sink strengths of absorbing surfaces for particles in crystals of the cubic system
Journal of Computational Physics


40. Yuriy Demidov, Andrii Zaitsevskii

Adsorption of the astatine species on a gold surface: A relativistic density functional theory study

Chemical Physics Letters


41. A.S. Sinitsa, I.V. Lebedeva, A.M. Popov, A.A. Knizhnik

Long triple carbon chains formation by heat treatment of graphene nanoribbon: molecular dynamics study with revised Brenner potential



42. A.A. Davydov
On the Smallest Size of an Almost Complete Subset of a Conic in PG(2,q) and Extendability of Reed–Solomon Codes
Problems of Information Transmission, 2018, Vol. 54, No. 2, pp. 101–115


43. V.V. Brazhkin, Y.D. Fomin, V.N. Ryzhov, E.N. Tsiok, K. Trachenko
Liquid-like and gas-like features of a simple fluid: An insight from theory and simulation
Physica A (2018)


44. A. Gorobets
Simulation of aerodynamics and aeroacoustics of helicopter main rotor on unstructured meshes
6th European Conference on Computational Mechanics (ECCM 6)


45. S.S. Aleshin, A.S. Bikeev, D.S. Oleynik, A.I. Shcherenko
Calculation of “full core” VVER-1000 benchmark
Kerntechnik August, Vol. 83, No. 4 : Pages 294-298


46. K.M. Sergeenko, V.V. Malakhanov, A.R. Belousov, I.N. Vishnaykov, N.S. Karpov, A.G. Nemolochnov
Mathematical modeling of water flow through a broad-crested spillway using the CFD code STAR-CCM+


47. A. Sboev, I. Moloshnikov, D. Gudovskikh, A. Selivanov, R. Rybka, T. Litvinova
Deep Learning neural nets versus traditional machine learning in gender identification of authors of RusProfiling texts

Procedia Computer Science, 123, 424-431


48. A. Sboev, I. Moloshnikov, D. Gudovskikh, A. Selivanov, R. Rybka, T. Litvinova
Automatic gender identification of author of Russian text by machine learning and neural net algorithms in case of gender deception
Procedia Computer Science Volume 123, 2018, Pages 417-423


49. A. Sboev, R. Rybka, A. Serenko, D. Vlasov, N. Kudryashov, V. Demin
To the role of the choice of the neuron model in spiking network learning on base of Spike-Timing-Dependent Plasticity
Procedia Computer Science, 123, 432-439


50. A. Sboev, D. Vlasov, R. Rybka, A. Serenko
Solving a classification task by spiking neurons with STDP and temporal coding
Procedia Computer Science Volume 123, 2018


51. A. Sboev, D. Vlasov, A. Serenko, R. Rybka, I. Moloshnikov
On the applicability of STDP-based learning mechanisms to spiking neuron network models

AIP Advances, 6(11), 111305


52. A.G. Sboev, A. Serenko, D.S. Vlasov

Effective calculations on neuromorphic hardware based on spiking neural network approaches

Lobachevskii Journal of Mathematics, 38(5), 964-966


53. A. Sboev, I. Moloshnikov, D. Gudovskikh, R. Rybka

A comparison of Data Driven models of solving the task of gender identification of author in Russian language texts for cases without and with the gender deception

In Journal of Physics: Conference Series (Vol. 937, No. 1, p. 012046). IOP Publishing


54. A.A. Danshin
The development of a parallel algorithm and program for solving the stationary many-body schrodinger equation by the monte carlo method on the example of s states of atomic systems
Procedia computer science 2018. — Vol. 136. — P. 154–163


55. A.A. Pshenov, A.S. Kukushkin
SOLPS4.3 Modeling of Lithium Transport and Noncoronal Radiation in the T-15 Tokamak with Lithium Emitter? Collector Scheme in Use
Plasma Physics Reports


56. K.Yu. Khromov, A.A. Kovalishin, V.A. Ryabov, T.V. Tsvetkov, V.E. Velikhov
A topologically correct method of dislocations construction for atomistic modeling
Elsevier B.V. Computational Materials Science 156


57. Fedor S.Sharko, Sergey M.Rastorguev, Eugenia S.Boulygina, Svetlana V.Tsygankova, Amina S.Ibragimova, Alexey N.Tikhonov, Artem V.Nedoluzhko

Molecular phylogeny of the extinct Steller's sea cow and other Sirenia species based on their complete mitochondrial genomes

Elsevier B.V. Genomics, online 22 October 2018


58. T.N. Baymukhametov, Y.M. Chesnokov, E.B. Pichkur, K.M. Boyko, T.V. Tikhonova, A.G. Myasnikov, A.L. Vasiliev, A.V. Lipkin, V.O. Popov, M.V. Kovalchuk

Three-Dimensional Structure оf Cytochrome c Nitrite Reductase As Determined by Cryo-Electron Microscopy

Acta Naturae. 2018 Jul-Sep; 10(3): 48–56


59. Konstantin M. Boyko, Timur N. Baymukhametov, Yury M. Chesnokov, Michael Hons, Sofya V. Lushchekina, Petr V. Konarev, Alexey V. Lipkin, Alexandre L. Vasiliev, Patrick Masson, Vladimir O. Popov, Michail V. Kovalchuk

3D structure of the natural tetrameric form of human butyrylcholinesterase as revealed by cryoEM, SAXS and MD

Biochimie, 156 (2019) 196-205


60. Evgeny Pichkur, Timur Baimukhametov, Anton Teslyuk, Anton Orekhov, Roman Kamyshinsky, Yury Chesnokov, Viacheslav Ilyin, Alexander Vasiliev, Vasily Velikhov

Towards on-the-fly Cryo-Electron Microscopy Data Processing by High Performance Data Analysis

Journal of Physics: Conference Series, Volume 955, conference 1


61. A. Popinako, M. Antonov, D. Dibrova, A. Chemeris, O.S. Sokolova.

Analysis of the interactions between GMF and Arp2/3 complex in two binding sites by molecular dynamics simulation

Biochem Biophys Res Commun. 2018. Feb 5;496(2):529-535.


62. A.V. Popinako, M.Yu. Antonov, E.Yu. Bezsudnova, and V.O. Popov

The Role of Charged Residues in the Structural Adaptation of Short-Chain Alcohol Dehydrogenase (SDR) from Thermophilic Organisms to High Temperatures

Moscow University Chemistry Bulletin. 2018. Vol. 73. No. 5. P. 231–236


63. Ю.В. Кордонская,  В.И. Тимофеев, Ю.А. Дьякова, М.А. Марченкова, Ю.В. Писаревский, Д.Д. Подшивалов, М.В. Ковальчук

Исследование поведенияолигомеров белка лизоцима в растворах методом молекулярной динамики

Кристаллография, 2018, том 63, No 6, с. 902–905


64. Bikeev A.S., Kalugin M.A., Shkarovsky D.A., Shcherenko Anna I.

Simulation of VVER 1000 startup physics tests using the MCU Monte Carlo code

Annals of Nuclear Energy. – 2018. – Vol. 117. – Pp. 60-66.


65. Yu B. Ivanov (Kurchatov Inst., Moscow & Moscow Phys. Eng. Inst. & Dubna, JINR), A.A. Soldatov (Moscow Phys. Eng. Inst.)

Estimates of the baryon densities attainable in heavy-ion collisions from the beam energy scan program

Mar 29, 2018. 9 pp. Phys.Rev. C98 (2018) no.1, 014906


66. Sergey Sosnin, Maksim Misin, David S Palmer and Maxim V Fedorov

3D matters 3D-RISM and 3D convolutional neural network for accurate bioaccumulation prediction

IOP Publishing Ltd Journal of Physics: Condensed Matter, Volume 30, Number 32


67. B.A. Klumov, R.E. Ryltsev, N.M. Chtchelkatchev

Polytetrahedral structure and glass-forming ability of simulated Ni–Zr alloys

J. Chem. Phys. 149, 134501, 16 pp. (2018)


68. R.E. Ryltsev, B.A. Klumov, N.M. Chtchelkatchev, K.Yu. Shunyaev

Nucleation instability in supercooled Cu-Zr-Al glass-forming liquids

J. Chem. Phys. 149, 164502, 10 pp. (2018)


69. V.A. Sidorov, A.E. Petrova, N.M. Chtchelkatchev, M.V. Magnitskaya, L.N. Fomicheva, D.A. Salamatin, A.V. Nikolaev, I.P. Zibrov, F. Wilhelm, A. Rogalev, A.V. Tsvyashchenko

Magnetic, electronic and transport properties of high-pressure-synthesized chiralmagnets Mn1–xRhxGe

Phys. Rev. B 98, 125121, 15 pp. (2018)


70. Н.М. Щелкачев, Р.Е. Рыльцев, М.Г. Костенко, А.А. Ремпель

Стабильность бездефектных структур моноксида титана при высоких давлениях

Письма в ЖЭТФ, 108 (7), 510-515 (2018)


71. A.M. Belemuk, N.M. Chtchelkatchev, A.V. Mikheyenkov, K.I. Kugel

Quantum phase transitions and the degree of nonidentity in the system with two different species of vector bosons

New J. Phys. 20, 063039, 13 pp. (2018)


72. Н.М. Щелкачев, В.Г. Яржемский

"Влияние кристаллической структуры и примесей 3d-элементов на электронное строение топологического материала Cd3As2"

Неорганические материалы 54, № 11, 1157–1162 (2018)


73. I.P. Davydov

On the Forebody Shape Effect on Ship Resistance in Still Water and Seaway

Proc. of 14th Int. Conf. on Marine Sciences and Technologies (Black Sea 2018). – Varna, Bulgaria, 10-12 October, 2018. – P. 89–94.


74. E.E. Saperstein, S.S. Pankratov, S.V. Tolokonnikov M. Baldo

Inclusion of particle-vibration coupling in the Fayans functional: Odd-even mass differences of semimagic nuclei

Phys. Rev. C 97, 054324 (2018)


75. D.L. Boyda, V.V. Braguta, M.I. Katsnelson, A.Yu. Kotov

Lattice Quantum Monte Carlo Study of Chiral Magnetic Effect in Dirac Semimetals

Annals Phys. 396 (2018) 78-86


76. V.V. Braguta, M.I. Katsnelson, A. Yu. Kotov

Lattice field theory simulations of Dirac semimetals

Annals Phys. 391 (2018) 278-292


77. N.Yu. Astrakhantsev, V.V. Braguta, A.Yu. Kotov

Temperature dependence of the bulk viscosity within lattice simulation of SU(3) – gluodynamics

Phys.Rev. D98 (2018) no.5, 054515


78. А.Ю. Котов

Скорость сфалеронных переходов в решеточной глюодинамике

Письма в ЖЭТФ, 2018, том 108, выпуск 6, страницы 374–378


79. Т.Н. Баймухаметов, Ю.М. Чесноков, Е.Б. Пичкур, К.М. Бойко, Т.В. Тихонова, А.Г. Мясников, А.Л. Васильев, А.В. Липкин, В.О. Попов, М.В. Ковальчук

Пространственная структура цитохром c нитритредуктазы, полученная методом криоэлектронной микроскопии

ACTA NATURAE ТОМ 10 No 3 (38) 2018


80. А.В. Новиков

Методы численного моделирования выдува микроструи в сверхзвуковой пограничный слой

61-я Всероссийская научная конференция МФТИ, тезисы.


81. A.V. Novikov

Numerical study of wave trains in high-speed boundary layer over a cone

HiSST: International Conference on High-Speed Vehicle Science Technology 26–29 November 2018, Moscow, Russia


82. Andrey V. Novikov

Numerical Study of Unstable Wave Trains in a Hypersonic Cone Boundary Layer and Comparison with Experiments

AIP Conference Proceedings. — 2018. — Vol. 2027, No. 1 — Paper 030176.


83. I.V. Egorov, A.V. Novikov, N.V. Palchekovskaya

Numerical Simulation of the Flow over a Segment-Conical Body on the Basis of Reynolds Equations

Computational Mathematics and Mathematical Physics -- 2018. -- Vol.58, No.1. -- pp 118–129.